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Installation¤

Follow the steps below to install scicookie locally.

Install scicookie¤

scicookie uses modern Python packaging and can be installed using pip -

python -m pip install scicookie

Setting Up for Local Development¤

To contribute to scicookie, follow these steps to set up your development environment:

  • Fork the Repository: Begin by forking the scicookie repository on GitHub to your own account.

  • Clone Your Fork Locally: Clone the forked repository to your local machine and navigate into the project directory.

$ git clone git@github.com:your_username/scicookie.git
$ cd scicookie
  • Install Dependencies: Use mamba to create a Conda environment and poetry for managing Python dependencies.
$ mamba env create --file conda/dev.yaml --force
$ poetry config virtualenvs.create false
$ poetry install
  • Create a Development Branch: Make a dedicated branch for your bugfix or feature.
$ git checkout -b name-of-your-bugfix-or-feature

  • Make Changes Locally: You are now ready to implement your changes or improvements.

  • Install and Use Pre-commit Hooks: scicookie utilizes pre-commit hooks to ensure code quality. Install them locally and they will automatically run on each commit.

$ pre-commit install
$ pre-commit run --all-files

To bypass the hooks temporarily, use git commit with --no-verify.

  • Run Smoke Tests: Quickly validate the functionality of your changes with smoke tests.
$ makim tests.smoke

Always complement smoke tests with thorough unit testing to ensure code integrity.

  • Unit Testing with pytest: scicookie leverages pytest for unit testing, along with pytest-cov for coverage analysis. Run unit tests using:
$ python -m pytest

or

$ makim tests.unit
  • Commit and Push Changes: Stage, commit, and push your changes to GitHub. After setting the upstream branch once, subsequent pushes only require git push.
$ git add .
$ git commit -m "Detailed description of your changes."
$ git push --set-upstream origin <branch name>
  • Submit a Pull Request: Once your changes are pushed, go to the GitHub website to submit a pull request for review.

Feel free to read our Contributing Guide for more information on developing scicookie.